PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g14740.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 103aa    MW: 11520 Da    PI: 8.4914
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g14740.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-18855148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+ Ed ll ++v+q+G g+W+++a+  g++R++k+c++rw +yl
  Zjn_sc00002.1.g14740.1.am.mk  8 KGPWTALEDRLLTEYVQQHGEGCWSSVAKLTGLRRSGKSCRLRWVNYL 55
                                  79********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.299159IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-23558IPR009057Homeodomain-like
SMARTSM007171.9E-15757IPR001005SANT/Myb domain
PfamPF002492.8E-17855IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-23983IPR009057Homeodomain-like
CDDcd001672.24E-121055No hitNo description
PROSITE profilePS500905.1115687IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-85987IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MLQGGWRKGP WTALEDRLLT EYVQQHGEGC WSSVAKLTGL RRSGKSCRLR WVNYLRPDLK  60
RGKITPDEET VILQLHAMLG NSLWRLVDGD NCSAGDGSSG GDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-168812799MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604501e-89EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148697.17e-50MYB305
RefseqXP_002465878.19e-50hypothetical protein SORBIDRAFT_01g047450
SwissprotQ9SSA13e-33MYB57_ARATH; Transcription factor MYB57
TrEMBLB6T6358e-50B6T635_MAIZE; MYB305
TrEMBLC5WYU89e-50C5WYU8_SORBI; Putative uncharacterized protein Sb01g047450
STRINGSb01g047450.13e-49(Sorghum bicolor)
STRINGGRMZM2G089686_P012e-49(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132282433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.15e-41myb domain protein 305